Prof. Dr. Denis Burdakov

Prof. Dr. Denis Burdakov
Full Professor at the Department of Health Sciences and Technology
ETH Zürich
Additional information
Research area
The Burdakov lab (part of ETH Neurobehavioural Dynamics Lab ) enjoys thinking about general principles of brain function and malfunction, in relation to our body. They measure fast activity dynamics and functional interconnectivity of specific neurons, to ask big cross-disciplinary questions, overlapping with fields such as engineering (what control algorithms are best for performance in an uncertain world? what are their strengths and weaknesses?) and medicine (how can we target specific brain signals to treat common diseases?). Their experimental entry-point to these questions are genetically-defined "brain orchestrator" neurons of the lateral hypothalamus, chosen because their project CNS-wide, closely track internal variables, and are so important that brain function is dramatically altered if these cells are lost. Such neurons - for example orexin/hypocretin neurons, are increasingly implicated in disorders of energy balance, sleep, motor control, mood, and cognition.
Joining Burdakov lab for training: In general, we will consider applicants who 1) want to obtain hands-on training in modern tools of cellular/systems neuroscience in mouse models [optogenetics; chemogenetics; 2-photon and miniscope calcium imaging of neural circuit dynamics; fiber photometry; psychological, physiological and behavioural metrics at high temporal resolution in vivo; data time-series and other relevant analysis and coding in Matlab/Python] ; 2) are interested in our research focus as summarise here and in our publications - for lay overviews, see ETH press releases (e.g. eyes as windows into brain, neural basisof some"irrational" behaviour, tuning behaviour with diet); 3) possess excellent writing and coding skills, and curiosity and initiative to find and consume scientific information (eg from google scholar or similar databases).
Masters: If you are registered as master student in any course at ETH or another Swiss or European university, you could join the lab for a long (ca 6 months) full-time project. This will be typically be part of a larger, already established research study. If you are interested, contact Denis Burdakov directly.
PhDs: In addition to general criteria above, you need to have a masters (or equivalent) degree, fit intellectually and socially to our lab, and have a PhD stipend equivalent to ETH minimal stipends for doctoral students. The fit, and PhD stipend award, are decided directly by Denis Burdakov (at ETH most PhD stipends come from professors not programs). You can contact him if you are interested. Note: while all PhD projects are within our lab's general research focus described above, we usually do not discuss specific projects at application stage, because in our lab the precise PhD topic is decided in the second year of PhD. In the first year, we train the student in our on-site technologies and analyses*, determine their ability within the latter, collect preliminary data, and based on this (and latest literature!) identify specific hypotheses to test. Our PhD projects last 3-6 years.
Postdocs: Please contact Denis Burdakov if you are interested and satisfy our general conditions above.
BIO
Denis joined ETH in 2017 from The Francis Crick Institute in London. He was born in 1979, and grew up in Kyiv, Ukraine, and the UK. He was educated at Oxford (BA 2001, PhD 2004), where he studied medicine, physiology, and biophysics. In addition to working as a Senior Group Leader at the Crick, he previously held tenured faculty appointments at the University of Cambridge (Associate Professor of Pharmacology) and at King's College London (Professor and Chair of Systems Neuroscience); he also held an honorary professorship at UCL and a visiting professorship at UFRGS, Brazil. He has been a recipient of awards and grants from the ERC (Starting Grant), HFSP (Young Investigator Award), SNSF, MRC, BBSCR, HHMI, The Royal Society, and Diabetes UK.
Additional information
SELECTED RESEARCH ACHIEVEMENTS:
Tesmer AL, Li X, Bracey E, Schmandt C, Polania R, Peleg-Raibstein D, Burdakov D (2024) Orexin neurons mediate temptation-resistant voluntary exercise. Nature Neuroscience, 27: 1774-1782
Viskaitis P, Tesmer AL, Liu Z, Karnani MM, Arnold M, Donegan D, Bracey E, Grujic N, Patriarchi T, Peleg-Raibstein D, Burdakov D (2024) Orexin neurons track temporal features of blood glucose in behaving mice. Nature Neuroscience, 27: 1299-1308
Li H-T, Viskaitis P, Bracey E, Peleg-Raibstein D, Burdakov D (2024) Transient targeting of hypothalamic orexin neurons alleviates seizures in a mouse model of epilepsy. Nature Communications, 15: 1249
Grujic N, Tesmer A, Bracey E, Peleg-Raibstein D, Burdakov D (2023) Control and coding of pupil size by hypothalamic orexin neurons, Nature Neuroscience, 26(7):1160-1164.
Li H-T, Donegan D, Peleg-Raibstein D, Burdakov D (2022) Hypothalamic deep brain stimulation as a strategy to manage anxiety disorders. PNAS,119(16): 1-9
Viskaitis P, Arnold M, Garau C, Jensen LT, Fugger L, Burdakov D (2022) Ingested non-essential amino acids recruit brain orexin cells to suppress eating in mice. Current Biology,32: 1-10
Concetti C, Peleg-Raibstein D, Burdakov D (2020) Control of fear extinction by hypothalamic MCH neurons. PNAS, 117(36): 22514-22521
Karnani M, Schöne C, Bracey E, Gonzalez J, Viskaitis P, Li H-T, Adamantidis A, Burdakov D (2020) Role of spontaneous and sensory orexin neuron dynamics in rapid locomotion initiation. Progress in Neurobiology, 187: 101771
Kosse C, Burdakov D (2019) Natural hypothalamic circuit dynamics underlying object memorization. Nature Communications, 10(1): 2505
Blomeley C, Garau C, Burdakov D (2018) Accumbal D2 cells orchestrate innate risk-avoidance according to orexin signals. Nature Neuroscience, 21(1): 29-32
Kosse C, Schöne C, Bracey E, Burdakov D (2017) Orexin-driven GAD65 network of the lateral hypothalamus sets physical activity in mice. PNAS, 114(17): 4525-4530
Gonzalez A, Iordanidou P, Strom M, Adamantidis A, Burdakov D (2016) Awake dynamics and brain-wide inputs of hypothalamic MCH and orexin networks. Nature Communications,7: 11395
Gonzalez A, Jensen L, Iordanidou P, Strom M, Fugger L, Burdakov D (2016) Inhibitory interplay between orexin neurons and eating. Current Biology, 26: 2486-2491
Schöne C, Apergis-Schoute J, Sakurai T, Adamantidis A, Burdakov D (2014) Co-released orexin and glutamate evoked non-redundant spike outputs and computations in histamine neurons. Cell Reports, 7: 697-704
Karnani M, Apergis-Schoute J, Adamantidis A, Jensen L, de Lecea L, Fugger L, Burdakov D (2011) Activation of central orexin/hypocretin neurons by dietary amino acids. Neuron, 74(2): 616-629
Williams RH, Alexopoulos H, Jensen LT, Fugger L, Burdakov D (2008) Adaptive sugar sensors in hypothalamic feeding circuits. PNAS, 105(33): 11975-11980
Gonzalez JA, Jensen LT, Fugger L, Burdakov (2008) Metabolism-independent sugar sensing in central orexin neurons. Diabetes 57(10): 2569-2576
Williams RH, Jensen LT, Vekhratsky A, Fugger L, Burdakov D (2007) Control of hypothalamic orexin neurons by acid and CO2. PNAS, 104(25): 10685-10690
Course Catalogue
Spring Semester 2025
Number | Unit |
---|---|
752-6303-00L | Neurobiology of Eating and Drinking |
752-6306-00L | Physiology and Anatomy II |